rs6245953 SNP Detail

Summary

• ID
  rs6245953
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:38705511 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCATTTATAG CCCCTCTGTA
  AAAGCATTAT CTACAGGGCC ATCTCATGGG ATTGCTATGA GGTCAAAAAA AGTCGCATGT
  GTAAAGTCTC AGGCTAGTCC TTGGGATGCA GTCAGTCCTT GTTATAAGTG GACCATGAAC
  TAAGGTTCTG CACATCAGAG GCTCCCACTA CATGCAAACA TGGGCCAATG TCTACAGCAG
  K
  GGTTCTCAAC CTTCCTAACA CTGTGACCAC TTAACACAGT TCCTCATGGT GTGGTGACCC
  CCAGCCATAA AATGATTTTG TTGCTACTTC ATAGCTATTT AATTTTGCTA TTGTTGTGAA
  TGGAAAGGTA AATATCTGTG TTTTCTAGTG GTCTCAGGTG AGCCCTCGGT TGAGAACTGC
  TGGTCTAGAA GCAGGAGATT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8651714	WI_WGS_5_37449183	WI	MOUSE	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6245953					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:38705511 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm22249	predicted gene, 22249			1575 bp downstream
Rr610560	regulatory region 610560			360 bp distal
Rr610561	regulatory region 610561			1071 bp proximal
Tssr46062	transcription start site region 46062			1708 bp downstream
Tssr50811	transcription start site region 50811			1696 bp upstream
Wdr1	WD repeat domain 1			Intron
				Noncoding-Transcript-Variant