rs6246076 SNP Detail

Summary

• ID
  rs6246076
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:38603735 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         TTGAAAGGGG
  TAGAGGAGAC TGAAAGGTTT GCGTGCACAT GTGTGTGTGT GTGTGTGAGa gagagagaga
  cagagacaga gcgacagaga cagagagaca gagacacaga cacagagaga cagagacaca
  gagagagaca gagagagaAT GTGAGTTTGT ACATGTCAGT GAGTGTGTAT GTCAGTGAAT
  GAGAGTGTGT ATCCAtgtga gtgtgtgagt gagagttgtg tgtgtgtgtg tgtgtgtgtg
  W
  gagagagaga gaatgtgagt gtgtgtatgt cactgagtgt gtgtatccat ttgagtgcgt
  gagtgagagt ttgtatgtgt gtgactgagt gtgagaaatt gcatgtgtgt atatgtgtgt
  gtgtgtgtTG GGGCCAGTGG AAAGTTGACT CACAGAAAAG ACAACATGGA CAATACTCTG
  GGAGACTTGG GGTTCCGATG GTATTTGGGG TAGGTGTGGA TATGAGGTAT GATGTCCACT
  TAAAACTGAG                                                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8651837	WI_WGS_16_38608744	WI	MOUSE	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6246076					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:38603735 () rs orientation: forward

Symbol	Name	Function Class
Rr515900	regulatory region 515900	1588 bp distal
Tssr138414	transcription start site region 138414	845 bp upstream
Tssr141114	transcription start site region 141114	140 bp downstream
Tssr141115	transcription start site region 141115	229 bp downstream
Tssr141116	transcription start site region 141116	347 bp downstream
Tssr141117	transcription start site region 141117	487 bp downstream
Tssr141118	transcription start site region 141118	889 bp downstream
Upk1b	uroplakin 1B	within coordinates