rs6246915 SNP Detail

Summary

• ID
  rs6246915
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:38705631 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTATAAGTG GACCATGAAC
  TAAGGTTCTG CACATCAGAG GCTCCCACTA CATGCAAACA TGGGCCAATG TCTACAGCAG
  TGGTTCTCAA CCTTCCTAAC ACTGTGACCA CTTAACACAG TTCCTCATGG TGTGGTGACC
  CCCAGCCATA AAATGATTTT GTTGCTACTT CATAGCTATT TAATTTTGCT ATTGTTGTGA
  R
  TGGAAAGGTA AATATCTGTG TTTTCTAGTG GTCTCAGGTG AGCCCTCGGT TGAGAACTGC
  TGGTCTAGAA GCAGGAGATT GACCAGACTT GGCGCGCTGT GGCTGAGGAG CATGTAAGAG
  GGAGCATCGG TCTCCAGGAG CAATCACAAG CTGGGTGGTG GTACGCCAGA AGGCCTCCCC
  CAGTCATCTG TGGGTGATGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8652676	WI_WGS_5_37449303	WI	MOUSE	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6246915					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:38705631 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm22249	predicted gene, 22249			1695 bp downstream
Rr610560	regulatory region 610560			480 bp distal
Rr610561	regulatory region 610561			951 bp proximal
Tssr46062	transcription start site region 46062			1828 bp downstream
Tssr50811	transcription start site region 50811			1816 bp upstream
Wdr1	WD repeat domain 1			Intron
				Noncoding-Transcript-Variant