rs6247038 SNP Detail

Summary

• ID
  rs6247038
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:38705689 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATGGGCCAA TGTCTACAGC
  AGTGGTTCTC AACCTTCCTA ACACTGTGAC CACTTAACAC AGTTCCTCAT GGTGTGGTGA
  CCCCCAGCCA TAAAATGATT TTGTTGCTAC TTCATAGCTA TTTAATTTTG CTATTGTTGT
  GAATGGAAAG GTAAATATCT GTGTTTTCTA GTGGTCTCAG GTGAGCCCTC GGTTGAGAAC
  Y
  GCTGGTCTAG AAGCAGGAGA TTGACCAGAC TTGGCGCGCT GTGGCTGAGG AGCATGTAAG
  AGGGAGCATC GGTCTCCAGG AGCAATCACA AGCTGGGTGG TGGTACGCCA GAAGGCCTCC
  CCCAGTCATC TGTGGGTGAT GTCCAGGAAG ACAGCAGTGC TGAGGCGTGT TCCAGAAAGA
  AATGGAGACC TGGTTAGTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8652799	WI_WGS_5_37449361	WI	MOUSE	f	SNP							T		C
ss47699072	NES10240083	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T		T		T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6247038					SNP	T	T	T	T	T	T	T	T	C	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47699072	NES10240083	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:38705689 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm22249	predicted gene, 22249			1753 bp downstream
Rr610560	regulatory region 610560			538 bp distal
Rr610561	regulatory region 610561			893 bp proximal
Tssr46062	transcription start site region 46062			1886 bp downstream
Tssr50811	transcription start site region 50811			1874 bp upstream
Wdr1	WD repeat domain 1			Intron
				Noncoding-Transcript-Variant