rs6247092 SNP Detail

Summary

• ID
  rs6247092
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:107911114 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGATAGAA AGAACCGATT
  CCCAAAAGTT GTCCTCTGAC TTCCACATGT GTGCTATGGT CTTTGCACAC ACACGCACAC
  ACACACACCC CAGATGTTAT TTTTAAAAAT GAAGTACAGC AACAGTGGCT ATCTACCCCT
  GCCCCCTCCA GACAGTGTAG CTGATGGCTC CTCCTGTCTC TAAGTCCCGC CTCTTTTCCC
  R
  AAATACTTCA CAAAGTGTGC ATCCCTTTGA TTTCTTAGGA ATCTAAGAGC TGAAGAAGGA
  CTGACTTCAG AGTAATCTCT TTTACAAAGA GAACCAAACA CTACTTACAG GAGAGCAGTT
  TAAAAAGGGA CCAACATGCG CTCTCTGGTC TGACACTGGT TTCTAACCAT CTTCCACCCT
  GGCTGTCTTT ACCAGTGAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss8652853	WI_WGS_8_107022266	WI	MOUSE	f	SNP							A		G
ss47504560	NES11220113	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A		G		A	A	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs6247092					SNP	A	A	A	A	A	A	A	G	G	A	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47504560	NES11220113	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:107911114 () rs orientation: forward

Symbol	Name	Function Class
Cyb5b	cytochrome b5 type B	within coordinates
Rr669364	regulatory region 669364	1625 bp distal
Tssr79292	transcription start site region 79292	1379 bp downstream