rs6247407 SNP Detail

Summary

• ID
  rs6247407
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:59167564 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCCCAACT TGCTTCTTGG
  TCATAATGTT TGTACAGGAA TAGAAACCCT GACTATGACA ATCAGAAACA TGATGAAACT
  TGATGGAATA AAGTGAAGAC AATGATTTGA TGAAGGATTA CAGGGAAAAT GAGCAATTTA
  ACTGTTCCTT CAGTAATTGC TTAGTTGTTT TGGAAAACAT GTCCTATTTT GATTGAAAAG
  Y
  GTGCCAAGTC CAGTTCCGCA GCACATTGTG GTGGCCTTCA CTAGGAACCA GTGTGCTGAT
  TGTGAAAACT CACAAGACTA AAGGTGAACA CAAAGCAGCA GTTAGGGTGA GATCTGCCAG
  AGCTTTCTAG AAGGTTTCAA GCAAGACCGG GAGGCATGGA CAGACGTAAA AGGAACCTTG
  TGGAAAATTT TAATGTCAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss8653169	WI_WGS_10_59316856	WI	MOUSE	f	SNP							C		T
ss52331702	NES15284324	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C		C		C	C	C		T	C	C	T		C
ss323321767	CHEV_10_58794490	CHEVERUD	SCREENING_POP	f	SNP													C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs6247407					SNP	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52331702	NES15284324	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:59167564 () rs orientation: forward

Symbol	Name	Function Class
P4ha1	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha 1 polypeptide	within coordinates
Rr215341	regulatory region 215341	837 bp proximal