rs6247657 SNP Detail

Summary

• ID
  rs6247657
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:61296013 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         ACAGCAGGTA
  GTAAACTAAC CAGCTAGNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN
  NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNACA
  CTGGGTAAAA AAACAAACCA CAAAACTTTA TCTCAAGTTC TTAGCAGGTG AGAAAAACAT
  ATTTCCCTTA GGAAATACAA AACCACCCAA GTCTCCCAGG TCCTGGGACT GCAGGCCTGT
  Y
  GCCACTAGGC CTCTGCTCTG CATTTGAAGA GCTTTGCATG TGTGAGGACA CTGNCGCTTA
  GCACACTCAT AAAAGTGTTG GGAACAGTGT GCCTGCACTT ACCCACTGTG ATTCCGGGCC
  TGCTGTGCAT GAAGGGTGAG AAGGGTNTCC ATTCTCTCAT GATCTGTTCG GCAGACGAAA
  CAACAACTTT GTCTCTGTTT TTGGTTGGAG AATACTAGAT GTCACTCTGT GCTTCANACA
  CAGNGGCGTT                                                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8653419	WI_WGS_14_52155168	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6247657					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:61296013 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6575	CpG island 6575	1799 bp distal
Gm41168	predicted gene, 41168	457 bp upstream
Rr289684	regulatory region 289684	1388 bp proximal
Rr369842	regulatory region 369842	1752 bp downstream