rs6248102 SNP Detail

Summary

• ID
  rs6248102
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:13088170 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGTGGGAG GGTGAAATGC
  TTGGTTCGCT GACCAGCGAC AGGCTGGCTT CTAAAGGTAT ACATAGAGCC AGCTGCGAGT
  ACCCATGCAG AGCACATGGA GATTTGAATG AAAGGAAACG GAGAAAGGAG AGGAAGGGAA
  TGGAGACAAA GTGAGAGAGA AACCATGATA AGGAGAGAGG GGAGGGCAGA GAAAATGACA
  Y
  CAAGACAAAG CCACCCCAGA CATAGAAGAC ACAGGAGCCA AGGCCCTGAG CTTGGGGAGC
  TCGGCTGGAC CAGAGACTGC ACAAGGCAAA GCTGTACAGG CAGTGAGCAG CTCCCAGGCC
  TGTTCCCCCC TCCCCAAAAA GGCTTATTTT AGCTAGCCCA GAGCAGGCTC TGCTCGTGCA
  GAGCTGGCCT TGCTCCAGTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8653868	WI_WGS_8_13025128	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6248102					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:13088170 () rs orientation: forward

Symbol	Name	Function Class
F10	coagulation factor X	within coordinates
Rr659843	regulatory region 659843	838 bp distal
Rr659844	regulatory region 659844	322 bp distal
Rr659845	regulatory region 659845	within coordinates
Tssr76325	transcription start site region 76325	867 bp downstream
Tssr76326	transcription start site region 76326	818 bp downstream
Tssr76327	transcription start site region 76327	808 bp downstream
Tssr76328	transcription start site region 76328	780 bp downstream
Tssr76329	transcription start site region 76329	332 bp downstream
Tssr76330	transcription start site region 76330	185 bp downstream
Tssr76331	transcription start site region 76331	1133 bp upstream
Tssr76332	transcription start site region 76332	1156 bp upstream
Tssr76333	transcription start site region 76333	1188 bp upstream
Tssr76334	transcription start site region 76334	1199 bp upstream
Tssr76335	transcription start site region 76335	1367 bp upstream