rs6248245 SNP Detail

Summary

• ID
  rs6248245
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:57874769 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCAGTTCTC AGTCGGCCCC
  ACGAAGCGAA GCCTGGCTTC GGTGAGCGCC GCGGCTGGCT AGTCCTTCCT CCCGCCTCCC
  TTCCCTGGGC CCTCCTCCCT GGTTCTCTGC AACTGTGTAG TTTCGGATAC CGCCGCCGCC
  GCTGCAGCGT CGGAGTCAAG TCTGACTCCG GAGCCCGCGG GCTTTCCGCA ACAACCACCA
  S
  TTTATGCAAA CTTGCGGGTT TCCGGCTAGT GGGTAGCGAG AGTAGGAGCT TCCCCGGAGC
  GATTCGGTGT CTCGGAACAG CCACAGCCAG AGAGGCGGCG GGAGCGCGCG CACCAGACTC
  TGCTAGACGC GAAAGCGGAC GAGACAACTG CGGAATTCAC CCGCCGCGCC AGGGCACTTC
  CGAGACAACA GCCGACTGGC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8654012	WI_WGS_5_56793027	WI	MOUSE	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6248245					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:57874769 () rs orientation: forward

Symbol	Name	Function Class
4932441J04Rik	RIKEN cDNA 4932441J04 gene	within coordinates
Cpgi15874	CpG island 15874	1042 bp distal
Cpgi15875	CpG island 15875	within coordinates
Gm73136	predicted gene, 73136	784 bp downstream
Pcdh7	protocadherin 7	540 bp upstream
Rr611759	regulatory region 611759	759 bp distal
Rr611760	regulatory region 611760	190 bp proximal
Rr611761	regulatory region 611761	681 bp proximal
Tssr1483	transcription start site region 1483	711 bp upstream
Tssr46283	transcription start site region 46283	1254 bp downstream
Tssr46284	transcription start site region 46284	488 bp downstream
Tssr46285	transcription start site region 46285	190 bp downstream
Tssr46286	transcription start site region 46286	71 bp downstream
Tssr46287	transcription start site region 46287	53 bp upstream
Tssr46288	transcription start site region 46288	106 bp upstream
Tssr46289	transcription start site region 46289	234 bp upstream
Tssr46290	transcription start site region 46290	318 bp upstream
Tssr46291	transcription start site region 46291	608 bp upstream
Tssr46292	transcription start site region 46292	837 bp upstream
Tssr46293	transcription start site region 46293	1634 bp upstream
Tssr51039	transcription start site region 51039	1531 bp downstream