rs6248298 SNP Detail

Summary

• ID
  rs6248298
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:57874799 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTGGCTTC GGTGAGCGCC
  GCGGCTGGCT AGTCCTTCCT CCCGCCTCCC TTCCCTGGGC CCTCCTCCCT GGTTCTCTGC
  AACTGTGTAG TTTCGGATAC CGCCGCCGCC GCTGCAGCGT CGGAGTCAAG TCTGACTCCG
  GAGCCCGCGG GCTTTCCGCA ACAACCACCA GTTTATGCAA ACTTGCGGGT TTCCGGCTAG
  K
  GGGTAGCGAG AGTAGGAGCT TCCCCGGAGC GATTCGGTGT CTCGGAACAG CCACAGCCAG
  AGAGGCGGCG GGAGCGCGCG CACCAGACTC TGCTAGACGC GAAAGCGGAC GAGACAACTG
  CGGAATTCAC CCGCCGCGCC AGGGCACTTC CGAGACAACA GCCGACTGGC ACTTTTTCTC
  CCTTTGGCAA ACTAGATTTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8654065	WI_WGS_5_56793057	WI	MOUSE	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6248298					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:57874799 () rs orientation: forward

Symbol	Name	Function Class
4932441J04Rik	RIKEN cDNA 4932441J04 gene	within coordinates
Cpgi15874	CpG island 15874	1072 bp distal
Cpgi15875	CpG island 15875	within coordinates
Gm73136	predicted gene, 73136	814 bp downstream
Pcdh7	protocadherin 7	510 bp upstream
Rr611759	regulatory region 611759	789 bp distal
Rr611760	regulatory region 611760	160 bp proximal
Rr611761	regulatory region 611761	651 bp proximal
Tssr1483	transcription start site region 1483	681 bp upstream
Tssr46283	transcription start site region 46283	1284 bp downstream
Tssr46284	transcription start site region 46284	518 bp downstream
Tssr46285	transcription start site region 46285	220 bp downstream
Tssr46286	transcription start site region 46286	101 bp downstream
Tssr46287	transcription start site region 46287	23 bp upstream
Tssr46288	transcription start site region 46288	76 bp upstream
Tssr46289	transcription start site region 46289	204 bp upstream
Tssr46290	transcription start site region 46290	288 bp upstream
Tssr46291	transcription start site region 46291	578 bp upstream
Tssr46292	transcription start site region 46292	807 bp upstream
Tssr46293	transcription start site region 46293	1604 bp upstream
Tssr51039	transcription start site region 51039	1501 bp downstream