rs6248595 SNP Detail

Summary

• ID
  rs6248595
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:61296160 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAGGAAATA CAAAACCACC
  CAAGTCTCCC AGGTCCTGGG ACTGCAGGCC TGTCGCCACT AGGCCTCTGC TCTGCATTTG
  AAGAGCTTTG CATGTGTGAG GACACTGTCG CTTAGCACAC TCATAAAAGT GTTGGGAACA
  GTGTGCCTGC ACTTACCCAC TGTGATTCCG GGCCTGCTGT GCATGAAGGG TGAGAAGGGT
  R
  TCCATTCTCT CATGATCTGT TCGGCAGACG AAACAACAAC TTTGTCTCTG TTTTTGGTTG
  GAGAATACTA GATGTCACTC TGTGCTTCAC ACACAGAGGC GTTCTCTGCC CTGGAGAGTT
  TTGTCATAGA AATCAGGCTG AGAGATCAGT GCACCTTTGA CACCGCTCAG GCAAGTTCAT
  CATTTTGTAA GGAACAGGAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss8654363	WI_WGS_14_52155315	WI	MOUSE	f	SNP						A		G
ss51520163	NES14630124	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A		G		A	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs6248595					SNP	A	A	A	A	A	A	G	G	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51520163	NES14630124	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:61296160 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6575	CpG island 6575	1946 bp distal
Gm41168	predicted gene, 41168	310 bp upstream
Rr289684	regulatory region 289684	1241 bp proximal
Rr369842	regulatory region 369842	1899 bp downstream