rs6249165 SNP Detail

Summary

• ID
  rs6249165
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:61296250 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         ACTGCAGGCC
  TGTNGCCACT AGGCCTCTGC TCTGCATTTG AAGAGCTTTG CATGTGTGAG GACACTGNCG
  CTTAGCACAC TCATAAAAGT GTTGGGAACA GTGTGCCTGC ACTTACCCAC TGTGATTCCG
  GGCCTGCTGT GCATGAAGGG TGAGAAGGGT NTCCATTCTC TCATGATCTG TTCGGCAGAC
  GAAACAACAA CTTTGTCTCT GTTTTTGGTT GGAGAATACT AGATGTCACT CTGTGCTTCA
  Y
  ACACAGNGGC GTTCTCTGCC CTGGANAGTT TTGTCATAGA AATCAGGCTG AGAGATCAGT
  GCACCTTTGA CACCGCTCAG GCAAGTTCAT CATTTTGTAA GGAACAGGAT CTGAGTCCAA
  GTGGGAGGGG ACCTCAGCTT GATCATAGGT ACCCTGTGCA GTTGCAGATT AGTGGTAGAC
  TATGTTTTCT CAAGTCCTGG AGGAGATTAG GCAGGCTCCG ATTTCTGGTG GAGAGGCACC
  AACACATGCC                                                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8654933	WI_WGS_14_52155405	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6249165					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:61296250 () rs orientation: forward

Symbol	Name	Function Class
Gm41168	predicted gene, 41168	220 bp upstream
Rr289684	regulatory region 289684	1151 bp proximal
Rr369842	regulatory region 369842	1989 bp downstream