rs6249184 SNP Detail

Summary

• ID
  rs6249184
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:61296257 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGACACTG TCGCTTAGCA
  CACTCATAAA AGTGTTGGGA ACAGTGTGCC TGCACTTACC CACTGTGATT CCGGGCCTGC
  TGTGCATGAA GGGTGAGAAG GGTATCCATT CTCTCATGAT CTGTTCGGCA GACGAAACAA
  CAACTTTGTC TCTGTTTTTG GTTGGAGAAT ACTAGATGTC ACTCTGTGCT TCACACACAG
  W
  GGCGTTCTCT GCCCTGGAGA GTTTTGTCAT AGAAATCAGG CTGAGAGATC AGTGCACCTT
  TGACACCGCT CAGGCAAGTT CATCATTTTG TAAGGAACAG GATCTGAGTC CAAGTGGGAG
  GGGACCTCAG CTTGATCATA GGTACCCTGT GCAGTTGCAG ATTAGTGGTA GACTATGTTT
  TCTCAAGTCC TGGAGGAGAT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8654952	WI_WGS_14_52155412	WI	MOUSE	f	SNP							A		T
ss51520160	NES14630125	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A		T		A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6249184					SNP	A	A	A	A	A	A	A	T	T	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51520160	NES14630125	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:61296257 () rs orientation: forward

Symbol	Name	Function Class
Gm41168	predicted gene, 41168	213 bp upstream
Rr289684	regulatory region 289684	1144 bp proximal
Rr369842	regulatory region 369842	1996 bp downstream