rs6249301 SNP Detail

Summary

• ID
  rs6249301
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:13088440 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGAGACTG CACAAGGCAA
  AGCTGTACAG GCAGTGAGCA GCTCCCAGGC CTGTTCCCCC CTCCCCAAAA AGGCTTATTT
  TAGCTAGCCC AGAGCAGGCT CTGCTCGTGC AGAGCTGGCC TTGCTCCAGT ACAAGGAGAA
  GCCTCAGCAA CACTGGGCAC CTCGCATGTA CTGGGGCCTT AATGAGGAAA ACATCTCTGG
  R
  AAACCTGCTA CCACTCAGTC GATGGGTCGA TGTCAGTAAG CCACTGGCAA GGTCAGCCCC
  ACAGAGACAG CCACATGTTT GAGGGCAGCA ACATGTGGGA ACTGGACAAA GGCCTCCAGT
  AACAAAGCAC ACAGCCGACA GTGAGCAGCA GGACCCTCCC ACCCCTCGAG TCAGGACAGT
  TGGAGTCCTT GCTGGGTTCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB	FVB/NJ	KK/HlJ	LG/J	LP/J	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss8655069	WI_WGS_8_13025398	WI	MOUSE	f	SNP												G		A
ss24774242	F10_AN7118_4	ROCHEBIO	RPAMM	f	SNP	G		G	G	G	G	G	G		G	G	G	G		G	G			G	A		G		A	A			A
ss47391422	NES11508735	PERLEGEN	MM_PANEL2	f	SNP		G		G	G		G		G		G		G		G		G	G			A		G			A	A		G
ss322503680	CHEV_8_13038440	CHEVERUD	SCREENING_POP	f	SNP																			G									A
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB	FVB/NJ	KK/HlJ	LG/J	LP/J	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs6249301					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	A	A	G	G	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47391422	NES11508735	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:13088440 () rs orientation: forward

Symbol	Name	Function Class
F10	coagulation factor X	within coordinates
Rr659843	regulatory region 659843	1108 bp distal
Rr659844	regulatory region 659844	592 bp distal
Rr659845	regulatory region 659845	within coordinates
Tssr76325	transcription start site region 76325	1137 bp downstream
Tssr76326	transcription start site region 76326	1088 bp downstream
Tssr76327	transcription start site region 76327	1078 bp downstream
Tssr76328	transcription start site region 76328	1050 bp downstream
Tssr76329	transcription start site region 76329	602 bp downstream
Tssr76330	transcription start site region 76330	455 bp downstream
Tssr76331	transcription start site region 76331	863 bp upstream
Tssr76332	transcription start site region 76332	886 bp upstream
Tssr76333	transcription start site region 76333	918 bp upstream
Tssr76334	transcription start site region 76334	929 bp upstream
Tssr76335	transcription start site region 76335	1097 bp upstream