rs6249573 SNP Detail

Summary

• ID
  rs6249573
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:4428941 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGCCAGCC CTGTTTTGAA
  CCTAATCCAC AAAGGACAAG CTGAAGATTG CCATGCTCTG GAAGACTTGA GACACACAGT
  AGTGGAATAA GTCAGTATGG GAAGTTTTAG GAAGCCATGT GGTTTTGCAC TTGTGCAAGT
  CAGGCTTAAG CGCCCATGGC AATGTAAGCC CTGTGGGTAC AACACAAAAC GTAATGAAGA
  W
  TCAGCACCAA CAATAAATAA AAAGTCAAAA AGCCATTTTC CAAGGCAGTG GCTCAGACAT
  TGGCCTGTTG GAATCATGCA CCTCTCCAAG AATCCAGGAG CATTAATTGT GCAATTCAGG
  AGTGAACTGA CGGTGTGCCG ATGTACCAAG GAAATACTCT AGATGGGATG TCTAGTCTAG
  ATTGAAGGCA GCAAATAGAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8655343	WI_WGS_1_4364680	WI	MOUSE	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6249573					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:4428941 () rs orientation: forward

Symbol	Name	Function Class
Rp1	retinitis pigmentosa 1 (human)	within coordinates
Tssr10872	transcription start site region 10872	1519 bp downstream
Tssr10873	transcription start site region 10873	1538 bp downstream