rs6249631 SNP Detail

Summary

• ID
  rs6249631
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:97468379 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAACAAAAT TAGAATTCAG
  GAAAGACTAG CCCAGAAATT CCAGAGCAGA GAATATGACC AAAGATAGCC TTGTTTCCTG
  AAAACTAACA GTCAATCTGG GAGCAAGAAT CTAACTGGTT GCTGAAAACT GGACCCAATG
  CTGGGCTGGT TGCTAGGGAA CCAGTGGTGC TGAGGAGGAG GATGCAGGCT GTGAATGGCG
  R
  GCCTTACTTC TGGGAAAGTA GTATCTGCAG AGATGGTTAA GGGAAACATA TCTCATCACT
  TTAACTCAAC TTTACCCAAG CGCCTGGTGC TTGGATGATC ACTGCAAAAC ACTTCATGCC
  TTCTCTTCAG ATCAGAAACT CTTCTACTAA TGTCAGAACT CGTGATTGTC ATGGTTATGT
  GGTGTAAATT TCTGACACTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

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SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8655401	WI_WGS_3_97884032	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6249631					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:97468379 () rs orientation: forward

Symbol	Name	Function Class
Chd1l	chromodomain helicase DNA binding protein 1-like	Coding-Synonymous
Gm40102	predicted gene, 40102	within coordinates