rs6249683 SNP Detail

Summary

• ID
  rs6249683
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:12163420 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAGAGCCA GGGGAATGGA
  GGGCACCAAG GAAACAAGAG CTTCCAGACA CAGCAGGGTC GGCACACACA TGGGCTCACA
  GAGACTGTGG CAGCATTCAG CCTTGCCAGG TGGGATCCCA GTGCTGAGAG AGGAAGCGGA
  CACAAGCCCC CACCTCTAAC CCAGAAGCTA TCTCCAATAG AGAACCACTT GCAAATAAAA
  R
  CACAGTTTTC TCCAACAGAG TCTCATTGGG TATAGCAACC ACTCTTAAGG TCAGATCCCA
  TGCCCAGCAG TAGGTGGGTA ACACAGTGGA ACTTTAAGGT TTGTCTTACA ATACTTTGTC
  AGGGCTTCTG TTTGTTTCCC TTAAAGGCCC TTTGTGTATA TACTATGGTT TCTGGGTTTG
  TGTTTTTATG GGTTTTCTGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8655453	WI_WGS_2_12263635	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6249683					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:12163420 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Itga8	integrin alpha 8			Intron
				Noncoding-Transcript-Variant
Rr372775	regulatory region 372775			within coordinates
Rr551880	regulatory region 551880			1999 bp proximal