rs6249868 SNP Detail

Summary

• ID
  rs6249868
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:57875057 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGAGAGGCG GCGGGAGCGC
  GCGCACCAGA CTCTGCTAGA CGCGAAAGCG GACGAGACAA CTGCGGAATT CACCCGCCGC
  GCCAGGGCAC TTCCGAGACA ACAGCCGACT GGCACTTTTT CTCCCTTTGG CAAACTAGAT
  TTTTTTTTTT TAAGCTACTT GGCAGCTCTG TTTGACTCCA CCTCCCCCTC CACCCCCGCC
  Y
  CAGTGGCTTT GGCTTTTCTT TGGAAATCCG GACAGAATTG GGCATCTTTG TTAATTGCCG
  TTAGGAGTGC CCGGTCGTGA GCTTTCACCG GGCCAGTGTC GCGCGGATGC ACGGAGCCAG
  GCTTGCTCAC CTTTGAACTG CAAAGGGATC AAGTTCAGCT CGAGTTCCCC GCATTGAGAC
  TGGAAGAAGC TGAGAGACTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8655638	WI_WGS_5_56793315	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6249868					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:57875057 () rs orientation: forward

Symbol	Name	Function Class
4932441J04Rik	RIKEN cDNA 4932441J04 gene	within coordinates
Cpgi15874	CpG island 15874	1330 bp distal
Cpgi15875	CpG island 15875	within coordinates
Gm73136	predicted gene, 73136	1072 bp downstream
Pcdh7	protocadherin 7	252 bp upstream
Rr611759	regulatory region 611759	1047 bp distal
Rr611760	regulatory region 611760	within coordinates
Rr611761	regulatory region 611761	393 bp proximal
Tssr1483	transcription start site region 1483	423 bp upstream
Tssr46283	transcription start site region 46283	1542 bp downstream
Tssr46284	transcription start site region 46284	776 bp downstream
Tssr46285	transcription start site region 46285	478 bp downstream
Tssr46286	transcription start site region 46286	359 bp downstream
Tssr46287	transcription start site region 46287	190 bp downstream
Tssr46288	transcription start site region 46288	160 bp downstream
Tssr46289	transcription start site region 46289	42 bp downstream
Tssr46290	transcription start site region 46290	30 bp upstream
Tssr46291	transcription start site region 46291	320 bp upstream
Tssr46292	transcription start site region 46292	549 bp upstream
Tssr46293	transcription start site region 46293	1346 bp upstream
Tssr51039	transcription start site region 51039	1243 bp downstream