rs6249981 SNP Detail

Summary

• ID
  rs6249981
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:99869908 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAATTGTTT TGTAAAAATA
  GAATCTTATT ATCCATTATC CTATACAGAA ATCCTTTTCA AATTATGAGT TACCACCCAT
  GAAATCAATT TAGTTGGTCT TTACCAGTTT GTCTTTTAAC AGGATGGAAG AAATGGTAAA
  AAAAGAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAGGACT ACTGCAGGTA GAGCATGCCG
  Y
  GCGGTGTGTG AGAAGGGCCA TTGTTCTTGC AACTTAATTT CAGGGTTATA GTTGAAGAAA
  AAAAACACTG TGCAAAGCAA AATATCTTTC TTACTCTGAG TTACAGTCAA AACAGCTTGA
  GTGTCTCTTA GAAGTGCTCC CGAGGGATGC ATGGAACAAA GATAGTGTTT AATAATGCTG
  AGTGAATGAG TGAATGGACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8655751	WI_WGS_5_97254756	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6249981					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:99869908 () rs orientation: forward

Symbol	Name	Function Class
A930011G23Rik	RIKEN cDNA A930011G23 gene	within coordinates
Gm73153	predicted gene, 73153	261 bp upstream
Rr119571	regulatory region 119571	908 bp distal
Rr130735	regulatory region 130735	1893 bp proximal
Tssr52054	transcription start site region 52054	63 bp upstream