rs6250237 SNP Detail

Summary

• ID
  rs6250237
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:97468540 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGTGGTGCT GAGGAGGAGG
  ATGCAGGCTG TGAATGGCGG GCCTTACTTC TGGGAAAGTA GTATCTGCAG AGATGGTTAA
  GGGAAACATA TCTCATCACT TTAACTCAAC TTTACCCAAG CGCCTGGTGC TTGGATGATC
  ACTGCAAAAC ACTTCATGCC TTCTCTTCAG ATCAGAAACT CTTCTACTAA TGTCAGAACT
  Y
  GTGATTGTCA TGGTTATGTG GTGTAAATTT CTGACACTGC ACAAGCACAT AAAATGTGAC
  TTTTATATTA AGGCTTTATA GGGACATAAA TCCTTTAGGG ACCACATGGA ATGCACGTAA
  GGATCTAGGT AAAAAGATAG ACGTTCTGTA TATAGAACCT AGAGGTTAAT CCTGTTGTTT
  CTAGCTAGTT TTTTGGACAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8656007	WI_WGS_3_97884193	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6250237					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:97468540 () rs orientation: forward

Symbol	Name	Function Class
Chd1l	chromodomain helicase DNA binding protein 1-like	Intron
Gm40102	predicted gene, 40102	within coordinates