rs6250693 SNP Detail

Summary

• ID
  rs6250693
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:91860677 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCGG GACACGCCCT GGACACGCCC
  Y
  AGACTGGGCG CTTCCGCTCG GATAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J	LG/J	SM/J
ss8656463	WI_WGS_8_90889791	WI	MOUSE	f	SNP			T	C
ss145564034	ENSMUSSNP2058244	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T			C
ss322789576	CHEV_8_93657948	CHEVERUD	SCREENING_POP	f	SNP						C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J	LG/J	SM/J
rs6250693					SNP	C	T	T	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:91860677 () rs orientation: forward

Symbol	Name	Function Class
Aktip	AKT interacting protein	within coordinates
Cpgi20808	CpG island 20808	within coordinates
Gm63829	predicted gene, 63829	1457 bp downstream
Rr368579	regulatory region 368579	33 bp upstream
Rr667489	regulatory region 667489	63 bp distal
Rr667490	regulatory region 667490	within coordinates
Rr667491	regulatory region 667491	1223 bp proximal
Rr667492	regulatory region 667492	1633 bp proximal
Tssr82405	transcription start site region 82405	27 bp upstream
Tssr82406	transcription start site region 82406	11 bp upstream
Tssr82407	transcription start site region 82407	1610 bp downstream
Tssr82408	transcription start site region 82408	1638 bp downstream
Tssr82409	transcription start site region 82409	1653 bp downstream