rs6251066 SNP Detail

Summary

• ID
  rs6251066
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:4429209 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGGAATCAT GCACCTCTCC
  AAGAATCCAG GAGCATTAAT TGTGCAATTC AGGAGTGAAC TGACGGTGTG CCGATGTACC
  AAGGAAATAC TCTAGATGGG ATGTCTAGTC TAGATTGAAG GCAGCAAATA GAAGGTAACA
  TTGTCCAGAG GGAATTCATG GAAAGCTCTG ATGCCAGATG CAGAGTAGCA GGGATGCCCT
  Y
  GGGAGGAAAG GGAAACCAGT GCAACACAGA GCCACCTCAC AAAAGCAAGA TCAGCTGTGT
  GAACACCAAC TCTTGATGGC AAAGTGTACT ATTTGCCATT TGAGCTTCTT TCTTAATTTG
  TGAAATTAAT GAAATTTCGG ATGGTTCTCT TATAAGCATT TTCAAACACA TTTCCTATGA
  GATTACAATA ATGCAATAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8656837	WI_WGS_1_4364948	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6251066					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:4429209 () rs orientation: forward

Symbol	Name	Function Class
Rp1	retinitis pigmentosa 1 (human)	within coordinates
Tssr10872	transcription start site region 10872	1251 bp downstream
Tssr10873	transcription start site region 10873	1270 bp downstream