rs6251238 SNP Detail

Summary

• ID
  rs6251238
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:154033659 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACAATTTCCA GTTAGGAGTA GAACATTGAA CTTATTCAAG
  TTCTCCAATG TGGCTTCATG CGTCAAAATG TATGTTGACA ATTAAGAGTC TCAGCTGTTG
  R
  TTGATAGGAT CATCTGAGGA GGTTGTGGGC AGGAAAGGTT GGCACCTAAA TATGGGTTTC
  CAGCAGACAC TGGCAAAAGG ACAAGAGAGC AAGGTTTGG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss8657010	WI_WGS_2_155009552	WI	MOUSE	f	SNP								A		G
ss37556667	NES08906001	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	A	G	A		G		G	A	G		G	G	G	G		A
ss45230014	mCV23868192	ABI	CRAMUS_MOUSE	f	SNP		A						A			G
ss320569698	CHEV_2_154017475	CHEVERUD	SCREENING_POP	f	SNP														G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs6251238					SNP	A	A	G	G	A	G	A	A	G	G	G	A	G	G	G	G	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37556667	NES08906001	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:154033659 () rs orientation: forward

Symbol	Name	Function Class
Bpifb1	BPI fold containing family B, member 1	Intron
Rr567774	regulatory region 567774	911 bp distal
Rr567775	regulatory region 567775	705 bp distal
Rr567776	regulatory region 567776	663 bp distal
Rr567777	regulatory region 567777	451 bp proximal
Tssr20971	transcription start site region 20971	980 bp downstream
Tssr20972	transcription start site region 20972	971 bp downstream
Tssr20973	transcription start site region 20973	957 bp downstream
Tssr20974	transcription start site region 20974	907 bp downstream
Tssr20975	transcription start site region 20975	882 bp downstream
Tssr20976	transcription start site region 20976	466 bp downstream
Tssr20977	transcription start site region 20977	1616 bp upstream