rs6251291 SNP Detail

Summary

• ID
  rs6251291
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:80367153 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGAC TTAATCTTGA GTAGGTCCCA
  Y
  ACTATACTAT GTTGGAATCA GGCAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8657063	WI_WGS_8_79247612	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6251291					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:80367153 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20624	CpG island 20624	85 bp distal
Gm51579	predicted gene, 51579	619 bp upstream
Otud4	OTU domain containing 4	within coordinates
Rr400987	regulatory region 400987	1041 bp downstream
Rr665883	regulatory region 665883	810 bp distal
Tssr78137	transcription start site region 78137	1126 bp downstream
Tssr78138	transcription start site region 78138	1100 bp downstream
Tssr78139	transcription start site region 78139	1053 bp downstream
Tssr78140	transcription start site region 78140	1005 bp downstream
Tssr78141	transcription start site region 78141	794 bp downstream
Tssr78142	transcription start site region 78142	744 bp downstream
Tssr78143	transcription start site region 78143	337 bp downstream
Tssr78144	transcription start site region 78144	306 bp downstream
Tssr78145	transcription start site region 78145	283 bp downstream
Tssr81884	transcription start site region 81884	1807 bp upstream