rs6251755 SNP Detail

Summary

• ID
  rs6251755
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:154033796 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGTTGGCACC TAAATATGGG TTTCCAGCAG ACACTGGCAA
  AAGGACAAGA GAGCAAGGTT TGGAGTCACA CAGACTTGAG TTCAAATCCT GGCTTCCTGT
  Y
  CTCGTCACTG TGTGACCTTG AATAAGTCAC CACCACTAGG TTTTCATCTG TGCAATGAGA
  GTCATATCTA AACTACCAGG CTCAGGAGCA GCCACTGCC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J	LG/J	SM/J
ss8657529	WI_WGS_2_155009689	WI	MOUSE	f	SNP			T	C
ss45304480	mCV23868193	ABI	CRAMUS_MOUSE	f	SNP		C	T		C
ss148023919	ENSMUSSNP5358223	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C			C
ss320569699	CHEV_2_154017612	CHEVERUD	SCREENING_POP	f	SNP						C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J	LG/J	SM/J
rs6251755					SNP	T	C	T	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:154033796 () rs orientation: forward

Symbol	Name	Function Class
Bpifb1	BPI fold containing family B, member 1	Intron
Rr567774	regulatory region 567774	1048 bp distal
Rr567775	regulatory region 567775	842 bp distal
Rr567776	regulatory region 567776	800 bp distal
Rr567777	regulatory region 567777	314 bp proximal
Rr567778	regulatory region 567778	1871 bp proximal
Tssr20971	transcription start site region 20971	1117 bp downstream
Tssr20972	transcription start site region 20972	1108 bp downstream
Tssr20973	transcription start site region 20973	1094 bp downstream
Tssr20974	transcription start site region 20974	1044 bp downstream
Tssr20975	transcription start site region 20975	1019 bp downstream
Tssr20976	transcription start site region 20976	603 bp downstream
Tssr20977	transcription start site region 20977	1479 bp upstream