rs6251980 SNP Detail

Summary

• ID
  rs6251980
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:72293236 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGCTAAACA TGTCCCTTTA
  TATGTATAGC TAAAACACTT CTATCATATT TCTAATTATA AAAAACTTCA TTTGTTATAG
  AAAATCTAGG AACTACAAAC AGACACAGAC CCACTCCACA CACTCTCCTC AGTCTGAAGA
  GGGCACCGGA ACTCCTTGCA TGTTCAGACA GTGAGCTCAG TGCTTTCTCT GCCCCTGCAG
  R
  CTCTGTCTGG CTCCACCCAC AGCACCTAAG CACCAGGGCA AGCTTTCTGC TCAGCCTGCT
  CTGAGACAGC AGTGGCTGAG ATGTAAATCC CTGGTCTGTA GACTTGAACT TTACAATAGA
  TATTTTGTAA GTGTACAGAT TATTGTCTCA AAAGTCCTTG ATTTCATTAC AACACTCAGG
  TAAGTGAAGG AAAGAGGGTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8657756	WI_WGS_6_73192673	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6251980					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72293236 () rs orientation: forward

Symbol	Name	Function Class
D6Mit243	DNA segment, Chr 6, Massachusetts Institute of Technology 243	1243 bp distal
Rr379593	regulatory region 379593	within coordinates
Rr632129	regulatory region 632129	within coordinates
Rr632130	regulatory region 632130	992 bp proximal
Sftpb	surfactant associated protein B	1882 bp downstream
Tssr1886	transcription start site region 1886	1695 bp downstream
Tssr57106	transcription start site region 57106	1941 bp downstream
Tssr57107	transcription start site region 57107	1834 bp downstream
Tssr57108	transcription start site region 57108	1806 bp downstream
Tssr57109	transcription start site region 57109	1757 bp downstream
Tssr57110	transcription start site region 57110	1733 bp downstream
Tssr57111	transcription start site region 57111	1714 bp downstream
Tssr57112	transcription start site region 57112	1645 bp downstream
Tssr57113	transcription start site region 57113	1504 bp downstream
Tssr57114	transcription start site region 57114	1361 bp downstream
Tssr57115	transcription start site region 57115	1336 bp downstream
Tssr57116	transcription start site region 57116	255 bp downstream
Tssr61422	transcription start site region 61422	1594 bp upstream
Tssr61423	transcription start site region 61423	1554 bp upstream
Tssr61424	transcription start site region 61424	1532 bp upstream
Tssr61425	transcription start site region 61425	1478 bp upstream
Tssr61426	transcription start site region 61426	1464 bp upstream
Tssr61427	transcription start site region 61427	1232 bp upstream