rs6251983 SNP Detail

Summary

• ID
  rs6251983
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:72293240 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAACATGTC CCTTTATATG
  TATAGCTAAA ACACTTCTAT CATATTTCTA ATTATAAAAA ACTTCATTTG TTATAGAAAA
  TCTAGGAACT ACAAACAGAC ACAGACCCAC TCCACACACT CTCCTCAGTC TGAAGAGGGC
  ACCGGAACTC CTTGCATGTT CAGACAGTGA GCTCAGTGCT TTCTCTGCCC CTGCAGGCTC
  Y
  GTCTGGCTCC ACCCACAGCA CCTAAGCACC AGGGCAAGCT TTCTGCTCAG CCTGCTCTGA
  GACAGCAGTG GCTGAGATGT AAATCCCTGG TCTGTAGACT TGAACTTTAC AATAGATATT
  TTGTAAGTGT ACAGATTATT GTCTCAAAAG TCCTTGATTT CATTACAACA CTCAGGTAAG
  TGAAGGAAAG AGGGTAAATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8657759	WI_WGS_6_73192677	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6251983					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72293240 () rs orientation: forward

Symbol	Name	Function Class
D6Mit243	DNA segment, Chr 6, Massachusetts Institute of Technology 243	1247 bp distal
Rr379593	regulatory region 379593	within coordinates
Rr632129	regulatory region 632129	within coordinates
Rr632130	regulatory region 632130	988 bp proximal
Sftpb	surfactant associated protein B	1886 bp downstream
Tssr1886	transcription start site region 1886	1699 bp downstream
Tssr57106	transcription start site region 57106	1945 bp downstream
Tssr57107	transcription start site region 57107	1838 bp downstream
Tssr57108	transcription start site region 57108	1810 bp downstream
Tssr57109	transcription start site region 57109	1761 bp downstream
Tssr57110	transcription start site region 57110	1737 bp downstream
Tssr57111	transcription start site region 57111	1718 bp downstream
Tssr57112	transcription start site region 57112	1649 bp downstream
Tssr57113	transcription start site region 57113	1508 bp downstream
Tssr57114	transcription start site region 57114	1365 bp downstream
Tssr57115	transcription start site region 57115	1340 bp downstream
Tssr57116	transcription start site region 57116	259 bp downstream
Tssr61422	transcription start site region 61422	1598 bp upstream
Tssr61423	transcription start site region 61423	1558 bp upstream
Tssr61424	transcription start site region 61424	1536 bp upstream
Tssr61425	transcription start site region 61425	1482 bp upstream
Tssr61426	transcription start site region 61426	1468 bp upstream
Tssr61427	transcription start site region 61427	1236 bp upstream