rs6252057 SNP Detail

Summary

• ID
  rs6252057
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:45181162 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGAAAGAG GTTTGTTTGA
  CTCATGACGT TTGGTATTAT ACATCTAGAA AGCACAGCAG TGGGTGTATG CATTGCACAC
  AGGAATGGAA GGGGGAATTT CCAAATATGT AAGGCCATAG TGTGTTTGGA AAGATGATCT
  ACTTTTTAAT GTCTGGATTG CTGAGGTAGC ACTAGTCTGT TCGTGAAGGA GCACTCATAA
  Y
  CTCATTATCT TCTAGTAGGC TCAGACTCTG AAATGGCTAA CTCAATCTCT CCATATTTGG
  GAACCAACAA ACCAGCAGAT GAAACTTTTG GTGATAGATT ACATTCAAAC CATGGCATTT
  GCATTAGGTA AGTTTCTTAG GACTTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGAG
  AGAGAGAGAG AGAGAGAGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8657833	WI_WGS_16_45407371	WI	MOUSE	f	SNP							C		T
ss48207847	NES12141578	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C		C		C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6252057					SNP	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48207847	NES12141578	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:45181162 () rs orientation: forward

Symbol	Name	Function Class
Gm30636	predicted gene, 30636	within coordinates
Gm30760	predicted gene, 30760	1626 bp downstream