rs6252208 SNP Detail

Summary

• ID
  rs6252208
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:154033866 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAGACTTGAG TTCAAATCCT GGCTTCCTGT TCTCGTCACT
  GTGTGACCTT GAATAAGTCA CCACCACTAG GTTTTCATCT GTGCAATGAG AGTCATATCT
  M
  AACTACCAGG CTCAGGAGCA GCCACTGCCT GGTGATCATT CAGAAACAGC AGGGCAGTCT
  GTTCTGCATG CTGGGCATCC CACTTCCTTC TGTGAATAA                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J	LG/J	SM/J
ss8657985	WI_WGS_2_155009759	WI	MOUSE	f	SNP			A	C
ss45219570	mCV23868194	ABI	CRAMUS_MOUSE	f	SNP		C	A		C
ss148023924	ENSMUSSNP6315106	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C			C
ss320569700	CHEV_2_154017682	CHEVERUD	SCREENING_POP	f	SNP						C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J	LG/J	SM/J
rs6252208					SNP	A	C	A	C	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:154033866 () rs orientation: forward

Symbol	Name	Function Class
Bpifb1	BPI fold containing family B, member 1	Intron
Rr567774	regulatory region 567774	1118 bp distal
Rr567775	regulatory region 567775	912 bp distal
Rr567776	regulatory region 567776	870 bp distal
Rr567777	regulatory region 567777	244 bp proximal
Rr567778	regulatory region 567778	1801 bp proximal
Tssr20971	transcription start site region 20971	1187 bp downstream
Tssr20972	transcription start site region 20972	1178 bp downstream
Tssr20973	transcription start site region 20973	1164 bp downstream
Tssr20974	transcription start site region 20974	1114 bp downstream
Tssr20975	transcription start site region 20975	1089 bp downstream
Tssr20976	transcription start site region 20976	673 bp downstream
Tssr20977	transcription start site region 20977	1409 bp upstream