rs6252220 SNP Detail

Summary

• ID
  rs6252220
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:154033868 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GACTTGAGTT CAAATCCTGG CTTCCTGTTC TCGTCACTGT
  GTGACCTTGA ATAAGTCACC ACCACTAGGT TTTCATCTGT GCAATGAGAG TCATATCTAA
  R
  CTACCAGGCT CAGGAGCAGC CACTGCCTGG TGATCATTCA GAAACAGCAG GGCAGTCTGT
  TCTGCATGCT GGGCATCCCA CTTCCTTCTG TGAATAATC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CZECHII/EiJ	DBA/2J	FVB/NJ	LG/J	SM/J	WSB/EiJ
ss8657997	WI_WGS_2_155009761	WI	MOUSE	f	SNP							A	G
ss37556666	NES08905974	PERLEGEN	MM_PANEL2	f	SNP	A			A	G	A			G	A			A
ss45279901	mCV23868198	ABI	CRAMUS_MOUSE	f	SNP			G				A		G
ss148023929	ENSMUSSNP6599675	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G						G
ss320569701	CHEV_2_154017684	CHEVERUD	SCREENING_POP	f	SNP											G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CZECHII/EiJ	DBA/2J	FVB/NJ	LG/J	SM/J	WSB/EiJ
rs6252220					SNP	A	A	G	A	G	A	A	G	G	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37556666	NES08905974	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:154033868 () rs orientation: forward

Symbol	Name	Function Class
Bpifb1	BPI fold containing family B, member 1	Intron
Rr567774	regulatory region 567774	1120 bp distal
Rr567775	regulatory region 567775	914 bp distal
Rr567776	regulatory region 567776	872 bp distal
Rr567777	regulatory region 567777	242 bp proximal
Rr567778	regulatory region 567778	1799 bp proximal
Tssr20971	transcription start site region 20971	1189 bp downstream
Tssr20972	transcription start site region 20972	1180 bp downstream
Tssr20973	transcription start site region 20973	1166 bp downstream
Tssr20974	transcription start site region 20974	1116 bp downstream
Tssr20975	transcription start site region 20975	1091 bp downstream
Tssr20976	transcription start site region 20976	675 bp downstream
Tssr20977	transcription start site region 20977	1407 bp upstream