rs6252235 SNP Detail

Summary

• ID
  rs6252235
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:154033884 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTGGCTTCCT GTTCTCGTCA CTGTGTGACC TTGAATAAGT
  CACCACCACT AGGTTTTCAT CTGTGCAATG AGAGTCATAT CTAAACTACC AGGCTCAGGA
  S
  CAGCCACTGC CTGGTGATCA TTCAGAAACA GCAGGGCAGT CTGTTCTGCA TGCTGGGCAT
  CCCACTTCCT TCTGTGAATA ATCAACTGCA AAGTTGTTT                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J	LG/J	SM/J
ss8658012	WI_WGS_2_155009777	WI	MOUSE	f	SNP			G	C
ss45333978	mCV23868199	ABI	CRAMUS_MOUSE	f	SNP		C	G		C
ss148023932	ENSMUSSNP5006270	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	C			C
ss320569702	CHEV_2_154017700	CHEVERUD	SCREENING_POP	f	SNP						C	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J	LG/J	SM/J
rs6252235					SNP	G	C	G	C	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:154033884 () rs orientation: forward

Symbol	Name	Function Class
Bpifb1	BPI fold containing family B, member 1	Intron
Rr567774	regulatory region 567774	1136 bp distal
Rr567775	regulatory region 567775	930 bp distal
Rr567776	regulatory region 567776	888 bp distal
Rr567777	regulatory region 567777	226 bp proximal
Rr567778	regulatory region 567778	1783 bp proximal
Tssr20971	transcription start site region 20971	1205 bp downstream
Tssr20972	transcription start site region 20972	1196 bp downstream
Tssr20973	transcription start site region 20973	1182 bp downstream
Tssr20974	transcription start site region 20974	1132 bp downstream
Tssr20975	transcription start site region 20975	1107 bp downstream
Tssr20976	transcription start site region 20976	691 bp downstream
Tssr20977	transcription start site region 20977	1391 bp upstream