rs6252327 SNP Detail

Summary

• ID
  rs6252327
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:84011048 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTGAAGCC ACTCCCCTTT
  TGACGTGCGG CTATTTGCAA CACATCTGGG CCTAGCTCAC AAGCACATAG CTTTTCATCT
  TCATCTTCCT CCTCCAGGCA GCCACTGAGA TTTACAGTTT GCCTGCCCTG GGGTTTCACT
  TTCAAATACG AATAAAATTT CTCCTCAAGA CTCCTTTTGA ACATTTAAAT TCATCATGAT
  K
  TTGAAGAGGA AAAGATGATC ACCTTAGCCG ATAAATATGC TCCCCATCTT AAGAATGCTT
  CTAATATCCC CTGTCTGTCT GTCTCCTCCC AATCCCACTG AACCCTGACC TCACAGACAG
  CAATACTAAT CCCACTTGAC TCCCTTAGGC CAGGGTGGAA GTCCCTGCCA CCACACCTTG
  CCACACACAC TCTGTGGCAC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8658105	WI_WGS_15_84926686	WI	MOUSE	f	SNP						T		G
ss48084127	NES12077394	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T		T		T	T	T	G	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6252327					SNP	T	T	T	T	T	T	T	G	T	T	T	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48084127	NES12077394	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:84011048 () rs orientation: forward

Symbol	Name	Function Class
Gm33432	predicted gene, 33432	431 bp upstream
Rr304809	regulatory region 304809	153 bp proximal
Rr310902	regulatory region 310902	within coordinates
Tssr132442	transcription start site region 132442	453 bp upstream
Tssr132443	transcription start site region 132443	476 bp upstream
Tssr132444	transcription start site region 132444	510 bp upstream