rs6252328 SNP Detail

Summary

• ID
  rs6252328
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:19430635 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGCG GCCCCAGCGC CTAGGTTGGC
  R
  GTGCGCTGGC GACCTTGCTC CACCA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss8658106	WI_WGS_7_14739513	WI	MOUSE	f	SNP						A		G
ss48163970	NES11834426	PERLEGEN	MM_PANEL2	f	SNP	G	A	A	A	G		G		A	A	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs6252328					SNP	G	A	A	A	G	A	G	G	A	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48163970	NES11834426	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:19430635 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Apoe	apolipoprotein E			Coding-Synonymous
				Intron
				Noncoding-Transcript-Variant
Cpgi18507	CpG island 18507			within coordinates
Cpgi18508	CpG island 18508			1689 bp proximal
D7Mit57	DNA segment, Chr 7, Massachusetts Institute of Technology 57			1061 bp proximal
Gm71725	predicted gene, 71725			408 bp upstream
Rr643239	regulatory region 643239			1174 bp distal
Rr643240	regulatory region 643240			238 bp distal
Rr643241	regulatory region 643241			within coordinates
Rr643242	regulatory region 643242			1547 bp proximal
Rr643243	regulatory region 643243			1565 bp proximal
Tssr2112	transcription start site region 2112			249 bp downstream
Tssr2113	transcription start site region 2113			219 bp downstream
Tssr2114	transcription start site region 2114			93 bp downstream
Tssr2115	transcription start site region 2115			65 bp downstream
Tssr2116	transcription start site region 2116			within coordinates
Tssr2117	transcription start site region 2117			14 bp upstream
Tssr2118	transcription start site region 2118			121 bp upstream
Tssr2119	transcription start site region 2119			130 bp downstream
Tssr2120	transcription start site region 2120			193 bp upstream
Tssr2121	transcription start site region 2121			225 bp upstream
Tssr2122	transcription start site region 2122			945 bp downstream
Tssr64880	transcription start site region 64880			436 bp downstream
Tssr64881	transcription start site region 64881			373 bp downstream
Tssr64882	transcription start site region 64882			314 bp downstream
Tssr64883	transcription start site region 64883			297 bp downstream
Tssr64884	transcription start site region 64884			269 bp downstream
Tssr64885	transcription start site region 64885			191 bp downstream
Tssr64886	transcription start site region 64886			156 bp downstream
Tssr64887	transcription start site region 64887			138 bp downstream
Tssr64888	transcription start site region 64888			70 bp upstream
Tssr64889	transcription start site region 64889			164 bp upstream
Tssr64890	transcription start site region 64890			210 bp upstream
Tssr64891	transcription start site region 64891			233 bp upstream
Tssr64892	transcription start site region 64892			266 bp upstream
Tssr64893	transcription start site region 64893			301 bp upstream
Tssr64894	transcription start site region 64894			755 bp upstream
Tssr64895	transcription start site region 64895			851 bp upstream
Tssr64896	transcription start site region 64896			877 bp upstream
Tssr70973	transcription start site region 70973			381 bp upstream
Tssr70974	transcription start site region 70974			348 bp upstream
Tssr70975	transcription start site region 70975			323 bp upstream
Tssr70976	transcription start site region 70976			271 bp upstream
Tssr70977	transcription start site region 70977			250 bp upstream
Tssr70978	transcription start site region 70978			227 bp upstream
Tssr70979	transcription start site region 70979			219 bp upstream
Tssr70980	transcription start site region 70980			205 bp upstream
Tssr70981	transcription start site region 70981			181 bp upstream
Tssr70982	transcription start site region 70982			152 bp upstream
Tssr70983	transcription start site region 70983			131 bp upstream
Tssr70984	transcription start site region 70984			71 bp upstream
Tssr70985	transcription start site region 70985			36 bp upstream
Tssr70986	transcription start site region 70986			7 bp upstream
Tssr70987	transcription start site region 70987			1 bp downstream
Tssr70988	transcription start site region 70988			45 bp downstream
Tssr70989	transcription start site region 70989			84 bp downstream
Tssr70990	transcription start site region 70990			96 bp downstream
Tssr70991	transcription start site region 70991			141 bp downstream
Tssr70992	transcription start site region 70992			149 bp downstream
Tssr70993	transcription start site region 70993			158 bp downstream
Tssr70994	transcription start site region 70994			199 bp downstream
Tssr70995	transcription start site region 70995			204 bp downstream
Tssr70996	transcription start site region 70996			237 bp downstream
Tssr70997	transcription start site region 70997			271 bp downstream
Tssr70998	transcription start site region 70998			333 bp downstream
Tssr70999	transcription start site region 70999			351 bp downstream
Tssr71000	transcription start site region 71000			794 bp downstream
Tssr71001	transcription start site region 71001			824 bp downstream
Tssr71002	transcription start site region 71002			884 bp downstream
Tssr71003	transcription start site region 71003			902 bp downstream
Tssr71004	transcription start site region 71004			930 bp downstream
Tssr71005	transcription start site region 71005			1281 bp downstream
Tssr71006	transcription start site region 71006			1314 bp downstream
Tssr71007	transcription start site region 71007			1372 bp downstream
Tssr71008	transcription start site region 71008			1478 bp downstream
Tssr71009	transcription start site region 71009			1496 bp downstream
Tssr71010	transcription start site region 71010			1640 bp downstream
Tssr71011	transcription start site region 71011			1673 bp downstream
Tssr71012	transcription start site region 71012			1709 bp downstream