rs6252497 SNP Detail

Summary

• ID
  rs6252497
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:72293349 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCACACAC TCTCCTCAGT
  CTGAAGAGGG CACCGGAACT CCTTGCATGT TCAGACAGTG AGCTCAGTGC TTTCTCTGCC
  CCTGCAGGCT CTGTCTGGCT CCACCCACAG CACCTAAGCA CCAGGGCAAG CTTTCTGCTC
  AGCCTGCTCT GAGACAGCAG TGGCTGAGAT GTAAATCCCT GGTCTGTAGA CTTGAACTTT
  R
  CAATAGATAT TTTGTAAGTG TACAGATTAT TGTCTCAAAA GTCCTTGATT TCATTACAAC
  ACTCAGGTAA GTGAAGGAAA GAGGGTAAAT GAGCCAAAGA CAGGCAGATC TCCAGGAGTT
  CAAGGCCTGC CTAGTCTACA GAGTGAGTTT CAGGCCAGCC AGGGCTATGG AGAAAGACCG
  TGAGTTACTT TCAGATGAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8658276	WI_WGS_6_73192786	WI	MOUSE	f	SNP							A		G
ss47978576	NES11922600	PERLEGEN	MM_PANEL2	f	SNP	A	A	G	A	A	A		G		A	G	G	G	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6252497					SNP	A	A	G	A	A	A	A	G	G	A	G	G	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47978576	NES11922600	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72293349 () rs orientation: forward

Symbol	Name	Function Class
D6Mit243	DNA segment, Chr 6, Massachusetts Institute of Technology 243	1356 bp distal
Rr379593	regulatory region 379593	within coordinates
Rr632129	regulatory region 632129	within coordinates
Rr632130	regulatory region 632130	879 bp proximal
Sftpb	surfactant associated protein B	1995 bp downstream
Tssr1886	transcription start site region 1886	1808 bp downstream
Tssr57107	transcription start site region 57107	1947 bp downstream
Tssr57108	transcription start site region 57108	1919 bp downstream
Tssr57109	transcription start site region 57109	1870 bp downstream
Tssr57110	transcription start site region 57110	1846 bp downstream
Tssr57111	transcription start site region 57111	1827 bp downstream
Tssr57112	transcription start site region 57112	1758 bp downstream
Tssr57113	transcription start site region 57113	1617 bp downstream
Tssr57114	transcription start site region 57114	1474 bp downstream
Tssr57115	transcription start site region 57115	1449 bp downstream
Tssr57116	transcription start site region 57116	368 bp downstream
Tssr61422	transcription start site region 61422	1707 bp upstream
Tssr61423	transcription start site region 61423	1667 bp upstream
Tssr61424	transcription start site region 61424	1645 bp upstream
Tssr61425	transcription start site region 61425	1591 bp upstream
Tssr61426	transcription start site region 61426	1577 bp upstream
Tssr61427	transcription start site region 61427	1345 bp upstream