rs6252540 SNP Detail

Summary

• ID
  rs6252540
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:45181256 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAATTTCCAA ATATGTAAGG
  CCATAGTGTG TTTGGAAAGA TGATCTACTT TTTAATGTCT GGATTGCTGA GGTAGCACTA
  GTCTGTTCGT GAAGGAGCAC TCATAACCTC ATTATCTTCT AGTAGGCTCA GACTCTGAAA
  TGGCTAACTC AATCTCTCCA TATTTGGGAA CCAACAAACC AGCAGATGAA ACTTTTGGTG
  R
  TAGATTACAT TCAAACCATG GCATTTGCAT TAGGTAAGTT TCTTAGGACT TGTGTGTGTG
  TGTGTGTGTG TGTGTGTGTG TGTGAGAGAG AGAGAGAGAG AGAGAGAGAG AGGCTTTACT
  AGGATGGTTT ATAATCCATA GACTCTGAGT AATCAAACAA CAGTCATTTA ATGCTGGAGG
  GGCAGAGAAG ATGATGACTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8658319	WI_WGS_16_45407465	WI	MOUSE	f	SNP						A		G
ss48207853	NES12141581	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A		A		A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6252540					SNP	A	A	A	A	A	A	A	G	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48207853	NES12141581	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:45181256 () rs orientation: forward

Symbol	Name	Function Class
Gm30636	predicted gene, 30636	within coordinates