rs6252598 SNP Detail

Summary

• ID
  rs6252598
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:3307875 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACTAATGTT GTTGGCAGGT
  CACATTAATC GTACCACTTT GATTTTAATA TTTATAAAAT TCTGAATGTT AGTTTCAGAT
  TTTAAAGATG AGGATACTGG GTTGCAAATA AAGCTCTTAA ACTTGAACCA ACACTAAATA
  ATTAGTGCTA TCAAGATTTA ATTTTTTATA TTTTGGGGTT ACTTCTGGTT TTGCATTTGT
  R
  GAAATGCCTG CTCTAAATGT CCAGCCATAT TGGAAAAAAA AAGGCAGAAA GATTTCATAT
  AATTGGCTTA AAACTTATAA ACTATTTGCT AAGGAGAATA ACATAGCATA GGATCTGATA
  TCTACATCAA ATCAGCACCT TTCTGTTTTG CTGTCAATTA TATGATACCT TATTTGTTCA
  ACCAAGAGAG AAAAAAGCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8658377	WI_WGS_15_3104021	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6252598					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:3307875 () rs orientation: forward

Symbol	Name	Function Class
Ccdc152	coiled-coil domain containing 152	1677 bp downstream
Rr498565	regulatory region 498565	782 bp distal
Selenop	selenoprotein P	within coordinates
Tssr4538	transcription start site region 4538	864 bp upstream
Tssr130395	transcription start site region 130395	1198 bp downstream
Tssr130396	transcription start site region 130396	1161 bp downstream
Tssr130397	transcription start site region 130397	728 bp upstream
Tssr130398	transcription start site region 130398	764 bp upstream
Tssr130399	transcription start site region 130399	872 bp upstream
Tssr130400	transcription start site region 130400	892 bp upstream
Tssr130401	transcription start site region 130401	906 bp upstream
Tssr130402	transcription start site region 130402	974 bp upstream
Tssr130403	transcription start site region 130403	1006 bp upstream
Tssr130404	transcription start site region 130404	1046 bp upstream
Tssr130405	transcription start site region 130405	1066 bp upstream
Tssr130406	transcription start site region 130406	1097 bp upstream
Tssr130407	transcription start site region 130407	1131 bp upstream
Tssr130408	transcription start site region 130408	1167 bp upstream
Tssr130409	transcription start site region 130409	1176 bp upstream
Tssr130410	transcription start site region 130410	1197 bp upstream
Tssr130411	transcription start site region 130411	1253 bp upstream
Tssr130412	transcription start site region 130412	1328 bp upstream
Tssr130413	transcription start site region 130413	1581 bp upstream
Tssr130414	transcription start site region 130414	1629 bp upstream
Tssr130415	transcription start site region 130415	1703 bp upstream
Tssr130416	transcription start site region 130416	2000 bp upstream
Tssr133563	transcription start site region 133563	796 bp downstream
Tssr133564	transcription start site region 133564	868 bp downstream
Tssr133565	transcription start site region 133565	916 bp downstream
Tssr133566	transcription start site region 133566	922 bp downstream
Tssr133567	transcription start site region 133567	1169 bp downstream
Tssr133568	transcription start site region 133568	1240 bp downstream