rs6252615 SNP Detail

Summary

• ID
  rs6252615
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:3307888 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCAGGTCAC ATTAATCGTA
  CCACTTTGAT TTTAATATTT ATAAAATTCT GAATGTTAGT TTCAGATTTT AAAGATGAGG
  ATACTGGGTT GCAAATAAAG CTCTTAAACT TGAACCAACA CTAAATAATT AGTGCTATCA
  AGATTTAATT TTTTATATTT TGGGGTTACT TCTGGTTTTG CATTTGTGGA AATGCCTGCT
  M
  TAAATGTCCA GCCATATTGG AAAAAAAAAG GCAGAAAGAT TTCATATAAT TGGCTTAAAA
  CTTATAAACT ATTTGCTAAG GAGAATAACA TAGCATAGGA TCTGATATCT ACATCAAATC
  AGCACCTTTC TGTTTTGCTG TCAATTATAT GATACCTTAT TTGTTCAACC AAGAGAGAAA
  AAAGCTGCTG TCAATTAAAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8658394	WI_WGS_15_3104034	WI	MOUSE	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6252615					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:3307888 () rs orientation: forward

Symbol	Name	Function Class
Ccdc152	coiled-coil domain containing 152	1664 bp downstream
Rr498565	regulatory region 498565	795 bp distal
Selenop	selenoprotein P	within coordinates
Tssr4538	transcription start site region 4538	851 bp upstream
Tssr130395	transcription start site region 130395	1211 bp downstream
Tssr130396	transcription start site region 130396	1174 bp downstream
Tssr130397	transcription start site region 130397	715 bp upstream
Tssr130398	transcription start site region 130398	751 bp upstream
Tssr130399	transcription start site region 130399	859 bp upstream
Tssr130400	transcription start site region 130400	879 bp upstream
Tssr130401	transcription start site region 130401	893 bp upstream
Tssr130402	transcription start site region 130402	961 bp upstream
Tssr130403	transcription start site region 130403	993 bp upstream
Tssr130404	transcription start site region 130404	1033 bp upstream
Tssr130405	transcription start site region 130405	1053 bp upstream
Tssr130406	transcription start site region 130406	1084 bp upstream
Tssr130407	transcription start site region 130407	1118 bp upstream
Tssr130408	transcription start site region 130408	1154 bp upstream
Tssr130409	transcription start site region 130409	1163 bp upstream
Tssr130410	transcription start site region 130410	1184 bp upstream
Tssr130411	transcription start site region 130411	1240 bp upstream
Tssr130412	transcription start site region 130412	1315 bp upstream
Tssr130413	transcription start site region 130413	1568 bp upstream
Tssr130414	transcription start site region 130414	1616 bp upstream
Tssr130415	transcription start site region 130415	1690 bp upstream
Tssr130416	transcription start site region 130416	1987 bp upstream
Tssr133563	transcription start site region 133563	783 bp downstream
Tssr133564	transcription start site region 133564	855 bp downstream
Tssr133565	transcription start site region 133565	903 bp downstream
Tssr133566	transcription start site region 133566	909 bp downstream
Tssr133567	transcription start site region 133567	1156 bp downstream
Tssr133568	transcription start site region 133568	1227 bp downstream