rs6252667 SNP Detail

Summary

• ID
  rs6252667
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:3307932 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTCTGAAT GTTAGTTTCA
  GATTTTAAAG ATGAGGATAC TGGGTTGCAA ATAAAGCTCT TAAACTTGAA CCAACACTAA
  ATAATTAGTG CTATCAAGAT TTAATTTTTT ATATTTTGGG GTTACTTCTG GTTTTGCATT
  TGTGGAAATG CCTGCTCTAA ATGTCCAGCC ATATTGGAAA AAAAAAGGCA GAAAGATTTC
  M
  TATAATTGGC TTAAAACTTA TAAACTATTT GCTAAGGAGA ATAACATAGC ATAGGATCTG
  ATATCTACAT CAAATCAGCA CCTTTCTGTT TTGCTGTCAA TTATATGATA CCTTATTTGT
  TCAACCAAGA GAGAAAAAAG CTGCTGTCAA TTAAAGTAGG CTATGATGGC TTTTTTATCC
  AACAGAACTG TGAAAACACT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8658446	WI_WGS_15_3104078	WI	MOUSE	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6252667					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:3307932 () rs orientation: forward

Symbol	Name	Function Class
Ccdc152	coiled-coil domain containing 152	1620 bp downstream
Rr498565	regulatory region 498565	839 bp distal
Selenop	selenoprotein P	within coordinates
Tssr4538	transcription start site region 4538	807 bp upstream
Tssr130395	transcription start site region 130395	1255 bp downstream
Tssr130396	transcription start site region 130396	1218 bp downstream
Tssr130397	transcription start site region 130397	671 bp upstream
Tssr130398	transcription start site region 130398	707 bp upstream
Tssr130399	transcription start site region 130399	815 bp upstream
Tssr130400	transcription start site region 130400	835 bp upstream
Tssr130401	transcription start site region 130401	849 bp upstream
Tssr130402	transcription start site region 130402	917 bp upstream
Tssr130403	transcription start site region 130403	949 bp upstream
Tssr130404	transcription start site region 130404	989 bp upstream
Tssr130405	transcription start site region 130405	1009 bp upstream
Tssr130406	transcription start site region 130406	1040 bp upstream
Tssr130407	transcription start site region 130407	1074 bp upstream
Tssr130408	transcription start site region 130408	1110 bp upstream
Tssr130409	transcription start site region 130409	1119 bp upstream
Tssr130410	transcription start site region 130410	1140 bp upstream
Tssr130411	transcription start site region 130411	1196 bp upstream
Tssr130412	transcription start site region 130412	1271 bp upstream
Tssr130413	transcription start site region 130413	1524 bp upstream
Tssr130414	transcription start site region 130414	1572 bp upstream
Tssr130415	transcription start site region 130415	1646 bp upstream
Tssr130416	transcription start site region 130416	1943 bp upstream
Tssr133563	transcription start site region 133563	739 bp downstream
Tssr133564	transcription start site region 133564	811 bp downstream
Tssr133565	transcription start site region 133565	859 bp downstream
Tssr133566	transcription start site region 133566	865 bp downstream
Tssr133567	transcription start site region 133567	1112 bp downstream
Tssr133568	transcription start site region 133568	1183 bp downstream