rs6252799 SNP Detail

Summary

• ID
  rs6252799
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:87840573 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCACCAGTAG TTAATTATAT
  GATAAATTTT AATGTCCATA ATAAGCTTAC ATTAAAACTG AATGATCTTT AGAAAGTTTA
  GAAAATCATA ATAAAGACAA GACAACTTAA ATATGCCTAA AGGATTATTT TATTGAAATG
  ACTGGAAAGG AAATAGGTTC TCAAAGAAAA AAAATAGAAA ATCCAATTTT TCACAAACTA
  Y
  TTTGTATACA TTATTGACTT GCATTTTCAA CTCCATATTG AACACTTATA AAATTCCTGT
  AATATAACTG AGAAGCATAT AGAGTCCATG GGTCGAATTC AAATGAATGC CATATAATAC
  ATAGAATAAA TAAAAGAATA CATTTTCTTT TCTTCCATGT AGATTAATTC AGAAATATAT
  CATTTTTGTA GCATGATCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8658578	WI_WGS_5_87297113	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6252799					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:87840573 () rs orientation: forward

Symbol	Name	Function Class
Csn2	casein beta	within coordinates
D5Mit12	DNA segment, Chr 5, Massachusetts Institute of Technology 12	1148 bp proximal
D5Mit16	DNA segment, Chr 5, Massachusetts Institute of Technology 16	1154 bp proximal
D5Mit16.1	DNA segment, Chr 5, Massachusetts Institute of Technology 16.1	1254 bp proximal
D5Mit16.2	DNA segment, Chr 5, Massachusetts Institute of Technology 16.2	952 bp proximal
Tssr1529	transcription start site region 1529	1840 bp upstream
Tssr46883	transcription start site region 46883	1787 bp upstream
Tssr46884	transcription start site region 46884	1800 bp upstream
Tssr46885	transcription start site region 46885	1828 bp upstream
Tssr46886	transcription start site region 46886	1856 bp upstream
Tssr46887	transcription start site region 46887	1873 bp upstream
Tssr46888	transcription start site region 46888	1942 bp upstream
Tssr46889	transcription start site region 46889	1991 bp upstream
Tssr51613	transcription start site region 51613	35 bp upstream
Tssr51614	transcription start site region 51614	24 bp downstream
Tssr51615	transcription start site region 51615	76 bp downstream
Tssr51616	transcription start site region 51616	111 bp downstream
Tssr51617	transcription start site region 51617	119 bp downstream
Tssr51618	transcription start site region 51618	1816 bp downstream
Tssr51619	transcription start site region 51619	1854 bp downstream
Tssr51620	transcription start site region 51620	1863 bp downstream
Tssr51621	transcription start site region 51621	1872 bp downstream
Tssr51622	transcription start site region 51622	1910 bp downstream
Tssr51623	transcription start site region 51623	1935 bp downstream
Tssr51624	transcription start site region 51624	1953 bp downstream
Tssr51625	transcription start site region 51625	1959 bp downstream
Tssr51626	transcription start site region 51626	1969 bp downstream
Tssr51627	transcription start site region 51627	1984 bp downstream