rs6252906 SNP Detail

Summary

• ID
  rs6252906
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:72293393 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCATGTTCAG ACAGTGAGCT
  CAGTGCTTTC TCTGCCCCTG CAGGCTCTGT CTGGCTCCAC CCACAGCACC TAAGCACCAG
  GGCAAGCTTT CTGCTCAGCC TGCTCTGAGA CAGCAGTGGC TGAGATGTAA ATCCCTGGTC
  TGTAGACTTG AACTTTACAA TAGATATTTT GTAAGTGTAC AGATTATTGT CTCAAAAGTC
  S
  TTGATTTCAT TACAACACTC AGGTAAGTGA AGGAAAGAGG GTAAATGAGC CAAAGACAGG
  CAGATCTCCA GGAGTTCAAG GCCTGCCTAG TCTACAGAGT GAGTTTCAGG CCAGCCAGGG
  CTATGGAGAA AGACCGTGAG TTACTTTCAG ATGAAAACAG TATTATTTGG AGCCAAAACT
  CACTCACTGA GAAATGCAAT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8658685	WI_WGS_6_73192830	WI	MOUSE	f	SNP							C		G
ss47978578	NES11922601	PERLEGEN	MM_PANEL2	f	SNP	C	C	G	C	C	C		G		C	G	G	G	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6252906					SNP	C	C	G	C	C	C	C	G	G	C	G	G	G	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47978578	NES11922601	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72293393 () rs orientation: forward

Symbol	Name	Function Class
D6Mit243	DNA segment, Chr 6, Massachusetts Institute of Technology 243	1400 bp distal
Rr379593	regulatory region 379593	within coordinates
Rr632129	regulatory region 632129	within coordinates
Rr632130	regulatory region 632130	835 bp proximal
Tssr1886	transcription start site region 1886	1852 bp downstream
Tssr57107	transcription start site region 57107	1991 bp downstream
Tssr57108	transcription start site region 57108	1963 bp downstream
Tssr57109	transcription start site region 57109	1914 bp downstream
Tssr57110	transcription start site region 57110	1890 bp downstream
Tssr57111	transcription start site region 57111	1871 bp downstream
Tssr57112	transcription start site region 57112	1802 bp downstream
Tssr57113	transcription start site region 57113	1661 bp downstream
Tssr57114	transcription start site region 57114	1518 bp downstream
Tssr57115	transcription start site region 57115	1493 bp downstream
Tssr57116	transcription start site region 57116	412 bp downstream
Tssr61422	transcription start site region 61422	1751 bp upstream
Tssr61423	transcription start site region 61423	1711 bp upstream
Tssr61424	transcription start site region 61424	1689 bp upstream
Tssr61425	transcription start site region 61425	1635 bp upstream
Tssr61426	transcription start site region 61426	1621 bp upstream
Tssr61427	transcription start site region 61427	1389 bp upstream