rs6253086 SNP Detail

Summary

• ID
  rs6253086
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:3307954 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTAAAGAT GAGGATACTG
  GGTTGCAAAT AAAGCTCTTA AACTTGAACC AACACTAAAT AATTAGTGCT ATCAAGATTT
  AATTTTTTAT ATTTTGGGGT TACTTCTGGT TTTGCATTTG TGGAAATGCC TGCTCTAAAT
  GTCCAGCCAT ATTGGAAAAA AAAAGGCAGA AAGATTTCAT ATAATTGGCT TAAAACTTAT
  R
  AACTATTTGC TAAGGAGAAT AACATAGCAT AGGATCTGAT ATCTACATCA AATCAGCACC
  TTTCTGTTTT GCTGTCAATT ATATGATACC TTATTTGTTC AACCAAGAGA GAAAAAAGCT
  GCTGTCAATT AAAGTAGGCT ATGATGGCTT TTTTATCCAA CAGAACTGTG AAAACACTAC
  CAAAGCTTTG ATGAAATTAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8658865	WI_WGS_15_3104100	WI	MOUSE	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6253086					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:3307954 () rs orientation: forward

Symbol	Name	Function Class
Ccdc152	coiled-coil domain containing 152	1598 bp downstream
Rr498565	regulatory region 498565	861 bp distal
Selenop	selenoprotein P	within coordinates
Tssr4538	transcription start site region 4538	785 bp upstream
Tssr130395	transcription start site region 130395	1277 bp downstream
Tssr130396	transcription start site region 130396	1240 bp downstream
Tssr130397	transcription start site region 130397	649 bp upstream
Tssr130398	transcription start site region 130398	685 bp upstream
Tssr130399	transcription start site region 130399	793 bp upstream
Tssr130400	transcription start site region 130400	813 bp upstream
Tssr130401	transcription start site region 130401	827 bp upstream
Tssr130402	transcription start site region 130402	895 bp upstream
Tssr130403	transcription start site region 130403	927 bp upstream
Tssr130404	transcription start site region 130404	967 bp upstream
Tssr130405	transcription start site region 130405	987 bp upstream
Tssr130406	transcription start site region 130406	1018 bp upstream
Tssr130407	transcription start site region 130407	1052 bp upstream
Tssr130408	transcription start site region 130408	1088 bp upstream
Tssr130409	transcription start site region 130409	1097 bp upstream
Tssr130410	transcription start site region 130410	1118 bp upstream
Tssr130411	transcription start site region 130411	1174 bp upstream
Tssr130412	transcription start site region 130412	1249 bp upstream
Tssr130413	transcription start site region 130413	1502 bp upstream
Tssr130414	transcription start site region 130414	1550 bp upstream
Tssr130415	transcription start site region 130415	1624 bp upstream
Tssr130416	transcription start site region 130416	1921 bp upstream
Tssr133563	transcription start site region 133563	717 bp downstream
Tssr133564	transcription start site region 133564	789 bp downstream
Tssr133565	transcription start site region 133565	837 bp downstream
Tssr133566	transcription start site region 133566	843 bp downstream
Tssr133567	transcription start site region 133567	1090 bp downstream
Tssr133568	transcription start site region 133568	1161 bp downstream