rs6253348 SNP Detail

Summary

• ID
  rs6253348
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:87840687 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTAAAGGA TTATTTTATT
  GAAATGACTG GAAAGGAAAT AGGTTCTCAA AGAAAAAAAA TAGAAAATCC AATTTTTCAC
  AAACTATTTT GTATACATTA TTGACTTGCA TTTTCAACTC CATATTGAAC ACTTATAAAA
  TTCCTGTAAT ATAACTGAGA AGCATATAGA GTCCATGGGT CGAATTCAAA TGAATGCCAT
  R
  TAATACATAG AATAAATAAA AGAATACATT TTCTTTTCTT CCATGTAGAT TAATTCAGAA
  ATATATCATT TTTGTAGCAT GATCCAAAGG TGAAAAGATT TGTACATTTC CAGTTTCAGT
  CAGTTCTGTG AAAGAAAGAT GTATAATCAT TTCTGTTGTG TTAAATCAGT GATTCCCAAC
  ATTCCCTTTA ATACTGCTCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8659127	WI_WGS_5_87297227	WI	MOUSE	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6253348					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:87840687 () rs orientation: forward

Symbol	Name	Function Class
Csn2	casein beta	within coordinates
D5Mit12	DNA segment, Chr 5, Massachusetts Institute of Technology 12	1034 bp proximal
D5Mit16	DNA segment, Chr 5, Massachusetts Institute of Technology 16	1040 bp proximal
D5Mit16.1	DNA segment, Chr 5, Massachusetts Institute of Technology 16.1	1140 bp proximal
D5Mit16.2	DNA segment, Chr 5, Massachusetts Institute of Technology 16.2	838 bp proximal
Tssr1529	transcription start site region 1529	1726 bp upstream
Tssr46883	transcription start site region 46883	1673 bp upstream
Tssr46884	transcription start site region 46884	1686 bp upstream
Tssr46885	transcription start site region 46885	1714 bp upstream
Tssr46886	transcription start site region 46886	1742 bp upstream
Tssr46887	transcription start site region 46887	1759 bp upstream
Tssr46888	transcription start site region 46888	1828 bp upstream
Tssr46889	transcription start site region 46889	1877 bp upstream
Tssr46890	transcription start site region 46890	1892 bp upstream
Tssr46891	transcription start site region 46891	1936 bp upstream
Tssr46892	transcription start site region 46892	1940 bp upstream
Tssr46893	transcription start site region 46893	1968 bp upstream
Tssr51613	transcription start site region 51613	149 bp upstream
Tssr51614	transcription start site region 51614	86 bp upstream
Tssr51615	transcription start site region 51615	30 bp upstream
Tssr51616	transcription start site region 51616	within coordinates
Tssr51617	transcription start site region 51617	5 bp downstream
Tssr51618	transcription start site region 51618	1702 bp downstream
Tssr51619	transcription start site region 51619	1740 bp downstream
Tssr51620	transcription start site region 51620	1749 bp downstream
Tssr51621	transcription start site region 51621	1758 bp downstream
Tssr51622	transcription start site region 51622	1796 bp downstream
Tssr51623	transcription start site region 51623	1821 bp downstream
Tssr51624	transcription start site region 51624	1839 bp downstream
Tssr51625	transcription start site region 51625	1845 bp downstream
Tssr51626	transcription start site region 51626	1855 bp downstream
Tssr51627	transcription start site region 51627	1870 bp downstream
Tssr51628	transcription start site region 51628	1911 bp downstream