rs6253362 SNP Detail

Summary

• ID
  rs6253362
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:97239106 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAATAATGAA CAAAAATAAG
  TCTGTGTGAG CCAACGAAAC CATCTCTTCC CTAGAGATGC TGTAAGTCAC GGTGCTTATC
  GTAGCAAAGG CAGGCAAATT AGAATGTGCA GTTCAGTAGC CTGAGGTGAT GCAGAATGTG
  GTGGTGGAGA GATGTTGGAC CACAGCATCT TACCTCAAGA GGTGCAGCTG GAGGCAGAGA
  Y
  GGGGAAGGAG CCAGGGACAA GACGACCCTC CAGAGGGGTC ACTGGTGGTC GGTGCCTGGA
  CCAGATGCAT CTTTTTTGAA GAGTTTGAAA AGGTGTACGC AGCCGGGTGG TGGTGGCGCA
  CGCCTTTAAT CCCAGCACTT GGGAGGCAGA GACAGGCGGA TTTCTGAGTT CAAGGCCAGC
  CTGGTCTACA AAGTGAGTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss8659141	WI_WGS_15_98241141	WI	MOUSE	f	SNP	C		T
ss39398967	mCV23239962	ABI	CRAMUS_MOUSE	f	SNP	C	T		T
ss148436511	ENSMUSSNP4591574	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		T
ss325076692	CHEV_15_97171656	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs6253362					SNP	C	T	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:97239106 () rs orientation: forward

Symbol	Name	Function Class
Gm33325	predicted gene, 33325	within coordinates
Pced1b	PC-esterase domain containing 1B	Intron
Rr404591	regulatory region 404591	1178 bp upstream
Rr508792	regulatory region 508792	1839 bp distal
Rr508793	regulatory region 508793	1131 bp proximal
Rr508794	regulatory region 508794	1826 bp proximal