rs6253699 SNP Detail

Summary

• ID
  rs6253699
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:3308110 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAAAAAGG CAGAAAGATT
  TCATATAATT GGCTTAAAAC TTATAAACTA TTTGCTAAGG AGAATAACAT AGCATAGGAT
  CTGATATCTA CATCAAATCA GCACCTTTCT GTTTTGCTGT CAATTATATG ATACCTTATT
  TGTTCAACCA AGAGAGAAAA AAGCTGCTGT CAATTAAAGT AGGCTATGAT GGCTTTTTTA
  Y
  CCAACAGAAC TGTGAAAACA CTACCAAAGC TTTGATGAAA TTAAAAACAT TTTCTCATGA
  AGCAGAATGT AAAGTTGCCA GTCTTTACTG ACATCTTTGA GTTGTCAGAG AGAAGCTATT
  TAGCTTTAGA AAACAGGATT AGATCAGATG GCAGGTTTGC AAAGTGACTT GTAGCAGAAC
  CGATGTTAAG ATTCTGAAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8659479	WI_WGS_15_3104256	WI	MOUSE	f	SNP							T		C
ss62609635	NES17307812	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T		C		T	T	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6253699					SNP	T	T	T	T	T	T	T	C	C	T	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62609635	NES17307812	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:3308110 () rs orientation: forward

Symbol	Name	Function Class
Ccdc152	coiled-coil domain containing 152	1442 bp downstream
Rr498565	regulatory region 498565	1017 bp distal
Selenop	selenoprotein P	Intron
Tssr4538	transcription start site region 4538	629 bp upstream
Tssr130395	transcription start site region 130395	1433 bp downstream
Tssr130396	transcription start site region 130396	1396 bp downstream
Tssr130397	transcription start site region 130397	493 bp upstream
Tssr130398	transcription start site region 130398	529 bp upstream
Tssr130399	transcription start site region 130399	637 bp upstream
Tssr130400	transcription start site region 130400	657 bp upstream
Tssr130401	transcription start site region 130401	671 bp upstream
Tssr130402	transcription start site region 130402	739 bp upstream
Tssr130403	transcription start site region 130403	771 bp upstream
Tssr130404	transcription start site region 130404	811 bp upstream
Tssr130405	transcription start site region 130405	831 bp upstream
Tssr130406	transcription start site region 130406	862 bp upstream
Tssr130407	transcription start site region 130407	896 bp upstream
Tssr130408	transcription start site region 130408	932 bp upstream
Tssr130409	transcription start site region 130409	941 bp upstream
Tssr130410	transcription start site region 130410	962 bp upstream
Tssr130411	transcription start site region 130411	1018 bp upstream
Tssr130412	transcription start site region 130412	1093 bp upstream
Tssr130413	transcription start site region 130413	1346 bp upstream
Tssr130414	transcription start site region 130414	1394 bp upstream
Tssr130415	transcription start site region 130415	1468 bp upstream
Tssr130416	transcription start site region 130416	1765 bp upstream
Tssr133563	transcription start site region 133563	561 bp downstream
Tssr133564	transcription start site region 133564	633 bp downstream
Tssr133565	transcription start site region 133565	681 bp downstream
Tssr133566	transcription start site region 133566	687 bp downstream
Tssr133567	transcription start site region 133567	934 bp downstream
Tssr133568	transcription start site region 133568	1005 bp downstream