rs6253949 SNP Detail

Summary

• ID
  rs6253949
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:97239223 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGTGT ACGCAGCCGG GTGGTGGTGG
  Y
  GCACGCCTTT AATCCCAGCA CTTGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss8659729	WI_WGS_15_98241258	WI	MOUSE	f	SNP	T	C
ss148436518	ENSMUSSNP3579869	ENSEMBL	ENSEMBL_Sanger	f	SNP			C
ss325076694	CHEV_15_97171773	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs6253949					SNP	T	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:97239223 () rs orientation: forward

Symbol	Name	Function Class
Gm33325	predicted gene, 33325	within coordinates
Pced1b	PC-esterase domain containing 1B	within coordinates
Rr404591	regulatory region 404591	1061 bp upstream
Rr508792	regulatory region 508792	1956 bp distal
Rr508793	regulatory region 508793	1014 bp proximal
Rr508794	regulatory region 508794	1709 bp proximal