rs6254449 SNP Detail

Summary

• ID
  rs6254449
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:131404041 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         AGGCGGCTAG
  GAAGACACCC ACTCCCACGC CCTGAGCACT CACCACTAGC CCCCCGACGG CCGCCGAGCC
  ATTCACCTCG CCGCTTGCCG CGGCCCCCGC TTCTGCCGTG GAGCTCTGGT TGTCCTCGCC
  GCTGCCGGTT CCCACCACAG CGCTACCGCC TGTGGCACCC GGCACGCCGC CCACCGCCGG
  ACCCTCGGGG CCAACCGTGC CAGCTCCGCC GCCCGCGCCG GAGCCCCCAG TGCTACTGCT
  Y
  GCCCGGGGTC CTTCGAAAGT GACGCTCAGG ATGTCGCGGA AAGTCATCTC ACGGCGCAGC
  CGTCGGGGCC CGAGCCCAGG CACAGGGCGA GCAAGTGGCG GGGAGGGAGC CCGCGGGCAT
  CGCCGCAGCG CCCGAGCCAG CCCCGCGCGC CGGTCCCGTC GGTCCTGCCC AAGTTCCCGC
  GGCAGAGGGG CCGCAGGGGA GCGGTGCTGC AGGGAGAGCG GGGCGGAGGT CACCAGGCCG
  TGAAGGTCCC                                                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8660230	WI_WGS_2_132562258	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6254449					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:131404041 () rs orientation: forward

Symbol	Name	Function Class
Adra1d	adrenergic receptor, alpha 1d	within coordinates
Cpgi12295	CpG island 12295	within coordinates
Gm14285	predicted gene 14285	within coordinates
Rr55657	regulatory region 55657	within coordinates
Tssr20277	transcription start site region 20277	502 bp downstream
Tssr20278	transcription start site region 20278	470 bp downstream
Tssr26401	transcription start site region 26401	367 bp downstream
Tssr26402	transcription start site region 26402	394 bp downstream
Tssr26403	transcription start site region 26403	634 bp downstream