rs6254620 SNP Detail

Summary

• ID
  rs6254620
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:39534329 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         AAATGAGCCA
  TGaaacatag ttcacaatta agccacagca ttctgcccct ggcaccatag gtgcacagca
  tctcatgatg aaaaatgcat ttgctccaac ttcaactaca aaagtacttg tagcttattg
  tgattattat ttaattttat tacttatgtg tatgactggt ttgtatatat atatatatat
  atatatatat atatatacat acatatatat atatatatat atatatacac atatatatca
  Y
  gtgtataata cccatggaaa ccagaagaag gtattagatc ccctggaaat ggagctacag
  atggttgtaa gccaacatgt gggtnttgga aattgaatct gggtcctttg gaagaacagc
  cagtgctctt aacctctgag ccagctcccc agccccctac agtttttaac agtcccaata
  ctgttccaag atcaaaagtc ccctctgaga ctcaagacaa cctcttaaat gtgaagctgt
  gggaaataaa                                                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8660401	WI_WGS_1_40004949	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6254620					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:39534329 () rs orientation: forward

Symbol	Name	Function Class
Rr409882	regulatory region 409882	1941 bp proximal
Tssr6382	transcription start site region 6382	1891 bp downstream