rs6254865 SNP Detail

Summary

• ID
  rs6254865
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:46044355 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGGT ACGTGAGGCT GGGCACGAAC
  W
  GCCTCACCCA CCAGGTCTAC TCTTG                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
ss8660646	WI_WGS_17_44753319	WI	MOUSE	f	SNP	T	A
ss325403978	CHEV_17_45870378	CHEVERUD	SCREENING_POP	f	SNP			T	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
rs6254865					SNP	T	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:46044355 () rs orientation: forward

Symbol	Name	Function Class
1600014C23Rik	RIKEN cDNA 1600014C23 gene	within coordinates
BE949265	cDNA sequence BE949265	1211 bp downstream
Cpgi9207	CpG island 9207	79 bp proximal
F630040K05Rik	RIKEN cDNA F630040K05 gene	1077 bp upstream
Rr331489	regulatory region 331489	1555 bp distal
Rr339882	regulatory region 339882	within coordinates
Tssr144810	transcription start site region 144810	1156 bp upstream
Tssr148277	transcription start site region 148277	414 bp downstream