rs6254866 SNP Detail

Summary

• ID
  rs6254866
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:76495462 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         AGCAAAGCCA
  AATGCTAAAA ATGTCTATAA GACAGAAGCA GTTTAAGAGA AGAAAAGAGC CAGGGATTTA
  AGGTCTGAAA GTACgagcta gggatgtgac tcaatgtgac tcaatggtag gatgttggcc
  tagcattcct gaagccccag gtttgatttc cagAAGGCGG TGTTGGGGAT TAGATCTATT
  CTGGGTGTGG TAGCAGCACT CAGGCCAGCC CTAGCTACAT ATTAAGTCCC TACCTCAAAG
  M
  Caaaaaaaaa aaaaaaaaat aataGAGTTT AGgcctctaa ttcctgcctt gtgagacgga
  ggaatcagag aggtacatga ccaagtcagg ctaagtaaga cgctgtctca aaacaaaaga
  aTAATAATAG TAAATAAAAA ATTAATAGCT TGCATCTAGA AATTCTGGTT GTAAATGTTT
  CTACCCCAGT TTAGCACAAA GTATATATGT ATAGTGGCTA AGTTGTATTT GTCCTTTTGC
  TTAAAAAATA                                                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8660647	WI_WGS_11_77235819	WI	MOUSE	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6254866					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:76495462 () rs orientation: forward

Symbol	Name	Function Class
Tssr109299	transcription start site region 109299	within coordinates