rs6255024 SNP Detail

Summary

• ID
  rs6255024
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:19295137 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         GTTCCTGGAC
  AAGCAGGTTA GCTTCCATAG AACACGGCCA GTGGGTGACC TCACTTCACA GGCTCCACCC
  AAGCAAAACA CAATTCAGCT CAGAAATGGG ATTAGCCTGT GTCCATCTCC CCAGCAACCT
  TTTCCCTTTC AAAGCCATCA AAGCCAATGC ACTCCTCCAA GTGCCCGTCC AGTTCCACCT
  CCCCACCAAC AGGCCTAGAT CTTAGATCTT CCCATCTCCC AACATGTAAG TCACCTTCTG
  Y
  TGAGTAGGGA ATACTGCCGA GTCCTTCCCC AGGTAAACCC TGGTAAAAGC GGGCTCCGCG
  TTCTGCTGCC GAACCTTACT GCGGAATTCC TCGCACACAG GCAAACTGGC CACCTCGTCC
  TCTGCTTTAC TACCTGCTGC CTCTGACCCT CCTTTCCCAG TCGGAGGGTT TACAAACTTC
  TGTACAGTCT GGGTTTATTT CCGTCCTCGT TTCAGCCAAA AGAGCAATGG CCATAGCCGG
  CTACGCTTTG                                                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8660805	WI_WGS_7_14601001	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6255024					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:19295137 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18499	CpG island 18499	within coordinates
Ppp1r37	protein phosphatase 1, regulatory subunit 37	within coordinates
Rr643187	regulatory region 643187	1948 bp distal
Rr643188	regulatory region 643188	1274 bp proximal
Rr643189	regulatory region 643189	1854 bp proximal
Tssr70928	transcription start site region 70928	910 bp downstream
Tssr70929	transcription start site region 70929	956 bp downstream
Tssr70930	transcription start site region 70930	989 bp downstream
Tssr70931	transcription start site region 70931	1165 bp downstream
Tssr70932	transcription start site region 70932	1200 bp downstream